If the atomic number of an element is how many protons and electrons it has, how do you find the
number of neutrons in an atom

How is it possible that phylogenies based on sequences from nuclear genomes and organellar genomes (i.e., chloroplasts and mitochondria) from the same group of species yield phylogenetic trees with different branching orders?   answer :   the genome of the endosymbiont is more closely related to members of the group in which it originally evolved, while the nuclear genome of the engulfing organism has its own evolutionary trajectory.